Ok Rob, I think that I finally understand what you are wanting to do. When you say that ConvertX has joined the files, that is not exactly correct. What you have on your dvd are 2 separate files correct? So when you have the program create the menu, it gives you 2 titles, which then have separate chapters from then on? What you need to do is combine the .avi files into a single file prior to running through convertx. An easy way to do this is with VirtualDub. Available HERE.
Once installed, open up the program and click "File ==> Open Video File" find the first file you want and click it. Next go to "Video" and click on "Direct Stream Copy." Next go back to "File ==> Append AVI Segment." (Yours will, but as a side note the file formats have to match to do this.) Last, select "File ==> Save AVI" and name it and choose your save location. When it is done processing, you will have a single file that can then be run through ConvertX and made into DVD with menus and chapters. Hopefully this works for you, let us know.




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sorry. but yes i get 2 files to choose from in the menu and then when i click on one of them it has the scene selection there and chapters for that title. thats correct.
I think it will work for you, I tried combining 2 files before I posted and it worked, however I didn't run the results through convertx, but I don't see that there will be any issue there. 

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